PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG290200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 424aa    MW: 44318.8 Da    PI: 9.201
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG290200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-09251298455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Pavir.6NG290200.1.p 251 RHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 298
                          599***********************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.98E-17244314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.37E-11245302No hitNo description
PROSITE profilePS5088815.478247297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-16250313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6251298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11253303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MLLGENTAMP NRAKQAKAEA KTRVKGSLGR SILKSSIKNT HLISLSLSLS VPTMDSFAWA  60
AVSQTPGLAA AGAVSDGRGG GLFPPMAGFH LPPPAGLGHF SLDSGLVERA GCSPCFGAAN  120
GTATTASASN ITLEGASGHR SKVAGGSSSV SGVHDEAGTG DCSSGGPEPD SKNMKRSNED  180
VLGTDQAKAS NASTDSANGS SRSKGVKGEE NGLAATTGVA GKRKRNGSKA PDEEGEGYIH  240
VRARKGQATN RHSLAERLRR EKISERMKLL QDLVPGCSKV TGKAVMLDEI INYVQSLQRQ  300
VEFLSMKLAA VNPQLGLNIE GILSKDLIRF PGAPPSAPIG FSLSQSGMVQ EGVHGLASSN  360
GFRTVMQEQL NERDSFREHV SQSLEQMPRA MDGWFHNAGQ PAYRAVINPE HLSISPDQDG  420
FHL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.74210.0callus| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973759.10.0PREDICTED: transcription factor bHLH49-like isoform X1
TrEMBLK3YNF21e-173K3YNF2_SETIT; Uncharacterized protein
STRINGSi015793m1e-173(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-51bHLH family protein